PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna13327.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 236aa    MW: 24643.2 Da    PI: 4.6697
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna13327.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.69.6e-1665113255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+G+r  +++g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+ +l+g
  mrna13327.1-v1.0-hybrid  65 LYRGIR--SRSGKWVSEIREPRK---STRIWLGTYAMPEMAAAAYDVAAIALKG 113
                              69***6..678*********843...5***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-964113IPR001471AP2/ERF domain
CDDcd000181.51E-1464121No hitNo description
Gene3DG3DSA:3.30.730.103.8E-2565122IPR001471AP2/ERF domain
SMARTSM003801.2E-2465127IPR001471AP2/ERF domain
PROSITE profilePS5103219.03265121IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1665122IPR016177DNA-binding domain
PRINTSPR003679.1E-66677IPR001471AP2/ERF domain
PRINTSPR003679.1E-6103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MADPYGNVPK SDEQPSDSNP PFFIQLPPTT STSSSIVNDL QDLSGLRSPT GGGSVSSSPR  60
GRHPLYRGIR SRSGKWVSEI REPRKSTRIW LGTYAMPEMA AAAYDVAAIA LKGPDTALNF  120
PSALITYPIP TSSAASDIRA AAARAAASRA EVIRQGESSS AGGVENVDRS GGGRGRRAAV  180
TSDDGGGSQE FMDEEALLNM PNLLADMAEG MLVSPPRGPA NDSPENSDGE SLWSY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308116.11e-168PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ902e-53ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLD5L1007e-67D5L100_MALDO; AP2 domain class transcription factor
STRINGVIT_16s0100g00400.t012e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-38ERF family protein